Enhanced host–guest interaction between [10]cycloparaphenylene ([10]CPP) and [5]CPP by cationic charges

• Eiichi Kayahara,
• Yoshiyuki Mizuhata and
• Shigeru Yamago

Beilstein J. Org. Chem. 2024, 20, 436–444, doi:10.3762/bjoc.20.38

• up new possibilities for the fabrication of supramolecular structures based on the non-covalent interactions using carbon nanorings [37][38]. Despite the unique structure of the host–guest complexes, however, their electronic structures are not very attractive. This is because the complex formation

• -complementary interaction between [5]CPP2+ and [10]CPP. The same size selectivity was observed for the complex formation between neutral CPPs [31]. As the protons in the 1H NMR of [10]CPP2+ and neutral [5]CPP resonate at 4.72 and 7.84 ppm, respectively [21], the observed chemical shifts of the complex indicate

• that the complex formation occurs between neutral [10]CPP and [5]CPP2+ forming [10]CPP⊃[5]CPP2+ (Figure 1c, path A) [21]. The absence of signals in the ESR measurements at room temperature also suggests the formation of complexes with a closed-shell electronic structure. The same complex was formed

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• -derived NHPI esters has found application in the total synthesis of natural products, including the plant metabolite denobilone A and the highly oxidized dibenzocyclooctadiene lignans heteroclitin J and kadsulignan E [55]. Activation via charge-transfer complex formation Under conditions where oxidative

• conditions, affording product 61 [60]. On the other hand, reaction with 1,7-enyne 62 affords dihydroquinolinone product 63 via a cascade radical addition/cyclization process [61]. In both transformations, HE serves a dual role by activating the NHPI ester through EDA complex formation and providing a

• -type additions. However, an alternative radical chain mechanism has been discussed in the literature [62] (Scheme 14). In this instance, chain initiation takes place through photoinduced SET, enabled by EDA complex formation between the reductant N-(n-butyl)-1,4-dihydronicotinamide (BuNAH) and an NHPI

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• such as K+, NH4+, and Ba2+ required two crown ether cavities attached to the porphyrin to form the coordination complexes through the dimerisation of the macrocycle. The dimensions of the crown ether pocket determined the complex formation; for example, if there was a mismatch in the sizes of the

• ]. The CsF binding led to a supramolecular self-assembly process, inducing a sandwich host–guest complex formation in the solid state (Scheme 2). It was established that fluoride is preferred over any other halide anions. The binding of the ion pairs was observed in highly polar solvent media, but in the

• . The addition of CsF showed an ion-pair host–guest complex formation. β-Crowned porphyrins The β-crowned porphyrins can be considered a particular case of annulated tetrapyrroles [105]. This class of macrocycles incorporating β-substituted pyrrole rings can also be considered porphyrinocrown ethers, in

Cyclodextrins permeabilize DPPC liposome membranes: a focus on cholesterol content, cyclodextrin type, and concentration

• Ghenwa Nasr,
• Hélène Greige-Gerges,
• Sophie Fourmentin,
• Abdelhamid Elaissari and
• Nathalie Khreich

Beilstein J. Org. Chem. 2023, 19, 1570–1579, doi:10.3762/bjoc.19.115

• CD concentration. The main reason behind these observations is the preferential lipid membrane extraction exhibited by the CDs. As a matter of fact, α-CD can remove phospholipids from membranes. A previous work reported that α-CD can extract DPPC through a special complex formation between the acyl

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on “in-out” structure, and theoretical calculations of non-covalent interactions

• Waldemar Iwanek

Beilstein J. Org. Chem. 2023, 19, 1525–1536, doi:10.3762/bjoc.19.109

• . This final geometry was used to calculate the contributions of non-covalent interactions in complex formation using the HFLD method with the recommended def2-TZVP(-f) base set and the universal solvation model (SMD) [26]. The procedure outlined above for determining the most energetically stable R[4]A

• . The yields of complex formation ranged from 45 to 78%. 1:1 Complex of R[4]A with dimethylamine: 45% yield; white solid; 1H NMR (400 MHz, DMSO-d6, T = 298 K) δ 7.15 (s, 4H, PhCH), 6.75–4.67 (br s, 8H, OH), 6.10 (s, 4H, PhCH), 4.34 (t, J = 7.70 Hz, 4H, CH), 2.30 (s, 6H, N(CH3)2), 1.94 (t, J = 6.97 Hz

Exploring the role of halogen bonding in iodonium ylides: insights into unexpected reactivity and reaction control

• Carlee A. Montgomery and
• Graham K. Murphy

Beilstein J. Org. Chem. 2023, 19, 1171–1190, doi:10.3762/bjoc.19.86

• had occurred, which was attributed to halogen bond complex formation. In 2019, the Murphy group reported the first transformation induced by blue LED irradiation of cyclic and acyclic iodonium ylides (e.g., 6) and alkenes, which generated cyclopropanes 40 in yields up to 96% (Scheme 8) [125]. UV–vis

• direct cycloaddition between the ylide and alkene. Murphy’s report of formal X–H insertions with iodonium ylides was similarly proposed to initiate upon complex formation with a Lewis base. Adduct formation was believed to both increase the acidity of halogen bond acceptor’s attached protons, as well as

• Radiofluorination of iodonium ylides In the preceding sections, the halogen-bonded complexes between iodonium ylides and Lewis basic reactants all decomposed to furnish functionalized β-dicarbonyl motifs. This is despite there being two available σ-holes for complex formation, and two pathways by which reductive

Direct C2–H alkylation of indoles driven by the photochemical activity of halogen-bonded complexes

• Martina Mamone,
• Giuseppe Gentile,
• Jacopo Dosso,
• Maurizio Prato and
• Giacomo Filippini

Beilstein J. Org. Chem. 2023, 19, 575–581, doi:10.3762/bjoc.19.42

• ambient temperature and under visible-light irradiation. Interestingly, this method employs 1,4-diazabicyclo[2.2.2]octane (DABCO) as sacrificial donor in the EDA complex formation with 2. To test the feasibility of our design plan, we focused on the reaction between 3-methylindole (1a, 2 equiv) and α

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• signalize complex formation (interaction with a biomolecule, cyclodextrine, metal cation, etc.) or change of receptor conformation [5][6]. Employment of pyrene as a biosensor is complicated due to its large aromatic surface's hydrophobicity and fluorescence sensitivity to oxygen. Therefore, modifications of

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• 126, it was used to form water-soluble porphyrin nanospheres by self-inclusion complex formation in water. Tritriazole-bridged porphyrin system This section contains the synthesis of porphyrin conjugates having three 1,2,3-triazole groups as linkers. In 2012, Beletskaya and co-workers [55] described

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• . Furthermore, no previous structure determinations via SCXRD analysis of CD complexes of BES and PRO have been reported. Many studies involved phase solubility analyses to determine CD complex formation and association constants. Our previous study of the complexation of the steroidal anticancer agent 2

• kneading experiments (co-grinding of the respective hosts and guests with water as a medium), the complex identities being subsequently determined unequivocally by powder X-ray diffraction (PXRD). Authentic CD complex formation was deduced from close correlation between the angular peak positions of the

• derivatised CDs containing BES and PRO, thus confirming the sustained interest in this approach and its significance in drug delivery. Previous studies of the complexation of BES, PRO and related compounds by CDs in the solution phase have typically reported the use of NMR spectroscopy to investigate complex

Automated grindstone chemistry: a simple and facile way for PEG-assisted stoichiometry-controlled halogenation of phenols and anilines using N-halosuccinimides

• Dharmendra Das,
• Akhil A. Bhosle,
• Amrita Chatterjee and
• Mainak Banerjee

Beilstein J. Org. Chem. 2022, 18, 999–1008, doi:10.3762/bjoc.18.100

• through p-position leading to the formation of the thermodynamically stable halo derivative via a σ-complex formation. The high concentration of substrates and reagents in the close proximity in this solvent-less process and grinding force could be the other reasons for the fast reaction kinetics. The

Heteroleptic metallosupramolecular aggregates/complexation for supramolecular catalysis

• Prodip Howlader and
• Michael Schmittel

Beilstein J. Org. Chem. 2022, 18, 597–630, doi:10.3762/bjoc.18.62

• procedure developed by Sauvage on the basis of topological control [33] has found ample use in the preparation of rotaxane-based machines and devices [34]. A key element is a macrocyclic phenanthroline with an endotopic binding site as it precludes homoleptic complex formation. A further principle

Synthesis and late stage modifications of Cyl derivatives

• Phil Servatius and
• Uli Kazmaier

Beilstein J. Org. Chem. 2022, 18, 174–181, doi:10.3762/bjoc.18.19

• , entry 1). Since the reaction seemed to stop after 30–40% conversion, it was speculated that the ester enolate chelate complex formation was incomplete due to consumption of the base. For instance, deprotonation of tyrosine residues in benzyl position has been observed previously in the derivatization of

1,2-Naphthoquinone-4-sulfonic acid salts in organic synthesis

• Ruan Carlos B. Ribeiro,
• Patricia G. Ferreira,
• Amanda de A. Borges,
• Luana da S. M. Forezi,
• Fernando de Carvalho da Silva and
• Vitor F. Ferreira

Beilstein J. Org. Chem. 2022, 18, 53–69, doi:10.3762/bjoc.18.5

• the presence of CuCl2 formed two isomers of 4-arylated-N-butylbenzo[c]carbazole-5,6-dione 60 and 4-amino-benzo[a]carbazol-5,6-dione 61 in 39% and 13% yields, respectively. These two reactions demonstrate the importance of the catalyst in complex formation with carbonyls of 18 that promote nucleophilic

Advances in mercury(II)-salt-mediated cyclization reactions of unsaturated bonds

• Sumana Mandal,
• Raju D. Chaudhari and
• Goutam Biswas

Beilstein J. Org. Chem. 2021, 17, 2348–2376, doi:10.3762/bjoc.17.153

• derivative 127. The plausible mechanism for the formation of compound 127 proceeded consecutively with π-complex formation, Friedel–Crafts type addition, deprotonation, and finally protonation of alcohol for the elimination of water to get the final product [92]. A Hg(OTf)2-mediated cyclization was utilized

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

Synthetic reactions driven by electron-donor–acceptor (EDA) complexes

• Zhonglie Yang,
• Yutong Liu,
• Kun Cao,
• Xiaobin Zhang,
• Hezhong Jiang and
• Jiahong Li

Beilstein J. Org. Chem. 2021, 17, 771–799, doi:10.3762/bjoc.17.67

• of N-heterocyclic compounds. In 2017, Wu and colleagues [58] uncovered the use of the bis(sulfur dioxide) adduct of DABCO, 1,4-diazabicyclo[2.2.2]octane·(SO2)2, as sulfone source in the EDA complex formation by 4-methyl-1-(p-tolyl)pentan-1-one O-(2,4-dinitrophenyl)oxime (11) towards the

• tetramethylethylenediamine (TMEDA) as additive in the EDA complex formation with perfluoroalkyl iodides 42 to afford 2-perfluoroalkylbenzothiazole products 43, employing blue LEDs (25 W) as irradiation source (Scheme 14). Notably, as (2-isocyanophenyl)(methyl)selane was exploited instead of substrate 41, new

• ; however, the presence of electron-donating substituents lowered the reactivity due to a negative impact on the EDA complex formation and led to a low yield. It is worth noting that the phase-transfer catalyst employed in this experiment is a suitable donor for the photosensitive EDA complex while at the

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

• IDPs upon tertiary and quaternary complex formation [79]. The Myc-Max heterodimer is a well-known oncogenic transcription factor complex able to bind to enhancer box (E-box) regions (5’-CACGTG-3’) of DNA with low-nanomolar affinity, what triggers its biological function as a transcriptional regulator

• tagging and PRE NMR spectroscopy to probe and trace the conformational changes experienced by disordered Myc upon Myc‐Max heterodimerization. Going beyond, they also employed 19F NMR to interrogate the changes induced in the Myc-Max heterodimer structure upon full quaternary complex formation in the

Molecular basis for protein–protein interactions

• Brandon Charles Seychell and
• Tobias Beck

Beilstein J. Org. Chem. 2021, 17, 1–10, doi:10.3762/bjoc.17.1

• knowledge of protein–protein interactions, common characterisation methods to characterise them, and their role in protein complex formation with some examples. A deep understanding of protein–protein interactions and their molecular interactions is important for a number of applications, including drug

• –protein complex formation. Finally, we will give a brief account of some examples for higher-order protein complexes and the PPIs involved. Review Characterisation methods for PPIs Particular PPIs can be relatively difficult to study since in vivo, any particular protein is present amongst a plethora of

• . Separately, the proteins that compose the complex are dyed, digested, and detected. The fragments that are detected in the painted complex but not detected in the painted protein monomers are the regions that were solvent accessible in the monomers but became inaccessible due to the complex formation, i.e

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• . Additional information about the complex formation between the ligands and the quadruplex DNA forms 22AG and a2 was provided by CD spectroscopy. The changes of the CD spectrum of 22AG upon the addition of derivatives 4a–e clearly indicate a shift of the equilibrium between the different quadruplex forms of

Optical detection of di- and triphosphate anions with mixed monolayer-protected gold nanoparticles containing zinc(II)–dipicolylamine complexes

• Lena Reinke,
• Julia Bartl,
• Marcus Koch and
• Stefan Kubik

Beilstein J. Org. Chem. 2020, 16, 2687–2700, doi:10.3762/bjoc.16.219

• ) and treating the solution with 50 equiv of zinc(II) nitrate per estimated number of DPA groups. An 1H NMR spectrum of the mixture was recorded after 30 min to confirm that complex formation had occurred and was complete. The solution was then evaporated and the nanoparticles redissolved in water

Thermodynamic and electrochemical study of tailor-made crown ethers for redox-switchable (pseudo)rotaxanes

• Henrik Hupatz,
• Marius Gaedke,
• Hendrik V. Schröder,
• Julia Beerhues,
• Arto Valkonen,
• Fabian Klautzsch,
• Sebastian Müller,
• Felix Witte,
• Kari Rissanen,
• Biprajit Sarkar and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2020, 16, 2576–2588, doi:10.3762/bjoc.16.209

• between the catechol ring of the crown ether and aromatic moieties of the secondary ammonium ion contribute to the complex formation [22][23][24][25]. Over the last 25 years, a detailed understanding of the thermodynamic and kinetic properties of crown ether/ammonium complexes has developed enabling the

• hand, additional π–π-interactions of the phenyl ring in A1·PF6 to the crown ether aromatic rings favor the complex formation. On the other hand, the flexibility of the alkyl substituent in A2·PF6 is diminished upon complexation, inducing a larger entropic penalty visible in the overall more negative

Hierarchically assembled helicates as reaction platform – from stoichiometric Diels–Alder reactions to enamine catalysis

• David Van Craen,
• Jenny Begall,
• Johannes Großkurth,
• Leonard Himmel,
• Oliver Linnenberg,
• Elisabeth Isaak and
• Markus Albrecht

Beilstein J. Org. Chem. 2020, 16, 2338–2345, doi:10.3762/bjoc.16.195

• ][17][18][19][20]. Enantioselectivities up to 25% ee at elevated temperature (32% ee at 0 °C) depending on the substrate were achieved in a Diels–Alder reaction by introducing two different substituted catechol ester ligands during the complex formation: (1) A diene-substituted ligand 1-H2 for the

Naphthalene diimide–amino acid conjugates as novel fluorimetric and CD probes for differentiation between ds-DNA and ds-RNA

• Annike Weißenstein,
• Myroslav O. Vysotsky,
• Ivo Piantanida and
• Frank Würthner

Beilstein J. Org. Chem. 2020, 16, 2032–2045, doi:10.3762/bjoc.16.170

• -induced emission quenching of acridine or 4,9-diazapyrene derivatives [43]. In order to confirm the fluorimetric data by an independent method, and also to characterise thermodynamic parameters of complex formation, ITC titrations were performed (Figure 6, Supporting Information File 1, Figures S28–S30

[3 + 2] Cycloaddition with photogenerated azomethine ylides in β-cyclodextrin

• Margareta Sohora,
• Leo Mandić and
• Nikola Basarić

Beilstein J. Org. Chem. 2020, 16, 1296–1304, doi:10.3762/bjoc.16.110

• , which changed from singlet to a multiplet (Figure S4 in Supporting Information File 1). Nonlinear regression analysis of the chemical shifts to the β-CD concentration did not provide a good quality of the fit to the model involving 1:1 complex formation (Figure S5 in Supporting Information File 1

• accordance with the formation of a ternary complex AN@2@β-CD (Scheme 2). However, they may also indicate that excess of AN added to the solution competitively binds to β-CD forming a complex AN@β-CD and inducing dissociation of the 2@β-CD. If we assume a model for the complex formation in the stoichiometry 1

• upfield shifts. Although the changes were small, we tried to process them using nonlinear regression analysis and model for the complex formation with 1:1:1 stoichiometry. The fit was of poor quality, but it provided an estimation of the constant with the value of K2 = 0–7 M−1 (Figure S9 in Supporting